Appendix D — Spectroscopy Reference

Comprehensive reference for IR, MS, NMR (¹H, ¹³C, 2D), and UV-Vis. Use alongside Chs 6 (structure determination overview) and 9 (NMR in depth). The final section gives a structure-determination workflow.


1. Infrared (IR) Spectroscopy

Range — 4000-400 cm⁻¹. Diagnostic region — 4000-1500 cm⁻¹ (functional groups). Fingerprint region — 1500-400 cm⁻¹ (overall pattern, usually for comparison rather than direct assignment).

Intensity codes — s = strong, m = medium, w = weak, br = broad, sh = sharp.

O-H, N-H, C-H region (3700-2500 cm⁻¹)

Bond Wavenumber Intensity / shape
O-H, alcohol/phenol, free (dilute) 3580-3650 sharp, m
O-H, alcohol/phenol, H-bonded 3200-3550 broad, s
O-H, COOH (dimeric) 2500-3300 very broad, s, often a "shoulder"
N-H, 1° amine (two bands) 3300-3500 m, two peaks
N-H, 2° amine (one band) 3300-3500 m, one peak
N-H, 3° amine none (no N-H)
N-H, amide (1° two bands; 2° one) 3180-3500 m
N-H, amide (also free N-H sharp) 3470 (free), 3350 (H-bond) m
=C-H, vinyl sp² 3000-3100 m
=C-H, aromatic sp² 3000-3100 m (often weak)
≡C-H, terminal alkyne 3260-3330 s, sharp
-C-H, sp³ 2840-3000 s
-CHO (aldehyde C-H) 2700-2900 (often two bands ~2720 and 2820) m

Triple-bond and cumulated region (2500-2000 cm⁻¹)

Bond Wavenumber Intensity
C≡C, alkyne 2100-2260 w (stronger if terminal)
C≡N, nitrile 2210-2260 m, sharp
-N=C=O (isocyanate) 2250-2275 s
-N=C=N- (carbodiimide) 2130 s
-N=N=N (azide) 2100-2270 m
-N=C=S (isothiocyanate) 2050-2150 s
-C=C=C (allene) 1950 (asym) w

Double-bond region (2000-1500 cm⁻¹)

Bond Wavenumber Intensity / note
C=O, acid chloride 1770-1815 s
C=O, anhydride two bands: 1750 and 1820 s, distinctive
C=O, ester 1735-1750 s
C=O, aldehyde 1720-1740 s
C=O, ketone 1705-1725 s
C=O, COOH 1700-1725 s, with broad OH
C=O, amide (1°/2°/3°) 1630-1690 s (lowest of the C=O group)
C=O, cyclic ketone (ring strain raises ν): cyclobutanone 1780 s
Cyclopentanone 1745 s
Cyclohexanone 1715 s
α,β-unsat C=O (conjugation lowers ν by ~30 cm⁻¹) 1670-1700 s
Aryl ketone 1680-1700 s
C=C, alkene 1620-1680 w-m
C=C, aromatic 1450-1600 m (often two bands ~1500 and 1600)
C=N, imine 1640-1690 m
N=O, nitro 1500-1570 (asym) and 1300-1370 (sym) s, two bands diagnostic
N=O, nitroso 1500-1600 m
C=S, thione 1050-1200 m

Single-bond / fingerprint region (1500-400 cm⁻¹)

Bond Wavenumber Notes
C-H bending (CH₃ asym/sym, CH₂ scissor) 1350-1480 m, diagnostic for alkyl
C-N, amine 1020-1250 m
C-O, ether/alcohol/ester 1050-1300 s, often broad complex
C-O, aryl ether 1200-1275 (Ar-O-R asym) s
C-Cl 600-800 s
C-Br 500-600 s
C-I 500-600 s
Aromatic C-H out-of-plane bend (substitution pattern) 690-900 s — useful for mono/di/tri substitution

Aromatic substitution pattern (out-of-plane C-H bending)

Pattern Bands (cm⁻¹)
Monosubstituted 690-710 and 730-770
1,2-disubstituted (ortho) 735-770
1,3-disubstituted (meta) 690-710, 750-810, 880-900
1,4-disubstituted (para) 800-840

Common IR artifacts

Artifact Cause
Sharp band ~2350 atmospheric CO₂ (background)
Broad ~3400 H₂O absorbed on KBr plate or in solvent
Sharp 1080 Si-O (silicone grease)
Broad 1620-1680 + 3300 residual H₂O
Doubled C=O Fermi resonance (aldehyde C-H/C=O); rotamers

2. Mass Spectrometry (MS)

M⁺• = molecular ion (radical cation). Base peak = tallest peak in spectrum. m/z = mass-to-charge.

Ionization techniques — when to use

Technique Sample type Energy Output
EI (electron ionization, 70 eV) small, volatile, neutral hard extensive fragmentation; M⁺• may be weak
CI (chemical ionization) small, neutral soft [M+H]⁺, less fragmentation
ESI (electrospray) polar, large, soluble very soft [M+H]⁺, [M+Na]⁺, multiply charged for proteins
MALDI large biomolecules, polymers soft [M+H]⁺, mostly singly charged
APCI medium polarity small molecules soft [M+H]⁺

Exact masses (monoisotopic, for high-res MS)

Element Exact mass
¹H 1.00783
¹²C 12.00000 (definition)
¹⁴N 14.00307
¹⁶O 15.99491
³²S 31.97207
³⁵Cl 34.96885
⁷⁹Br 78.91834
¹²⁷I 126.90447
³¹P 30.97376
¹⁹F 18.99840

Use — high-resolution mass spectrometry distinguishes isobars (e.g., C₂H₄ at 28.0313 vs N₂ at 28.0061 vs CO at 27.9949). Match to ~5 ppm.

Common neutral losses

Loss (Δm/z) Neutral Source / mechanism
1 H alpha-H loss
15 CH₃ α-cleavage of methyl
17 OH alcohols, carboxylic acids
18 H₂O alcohols (dehydration), aldehydes
19 F aryl fluoride loss (rare)
26 C₂H₂ aromatic loss
27 HCN nitriles, amines, N-heterocycles
28 CO or C₂H₄ or N₂ many sources — context required
29 CHO or C₂H₅ aldehyde α-cleavage; ethyl loss
30 CH₂O or NO aldehyde + H rearr; nitroso/nitro
31 OCH₃ methyl ester
32 CH₃OH or S methyl ester / dehydration
33 SH or CH₃ + H₂O thiols
35 Cl aryl chloride
36 HCl dehydrohalogenation
41 C₃H₅ (allyl) allylic systems
42 C₃H₆ or CH₂=C=O (ketene) propyl loss; McLafferty acyl
43 CH₃CO (acetyl) or C₃H₇ α-cleavage of methyl ketone; propyl
44 CO₂ or C₂H₄O decarboxylation; acetaldehyde elim
45 COOH or OC₂H₅ acid; ethyl ester
46 NO₂ nitro arene
57 C₄H₉ (t-Bu, n-Bu) branched alkyl
60 CH₃COOH acetate ester rearr
73 TMS (Si(CH₃)₃) silyl ethers
77 C₆H₅ (phenyl) aryl loss
91 C₇H₇⁺ (tropylium) benzyl — extremely stable cation
105 C₆H₅CO (benzoyl) aryl ketone α-cleavage

Isotope patterns

Element Isotopes (% natural) M+2 pattern
C ¹²C (98.9), ¹³C (1.1) small M+1 (~1.1% per C); no M+2
H ¹H (99.99), ²H (0.01) negligible
N ¹⁴N (99.6), ¹⁵N (0.4) negligible
O ¹⁶O (99.76), ¹⁸O (0.20) M+2 ~0.2% per O
F ¹⁹F (100) none
Si ²⁸Si (92), ²⁹Si (5), ³⁰Si (3) clear M+1, M+2
S ³²S (95), ³⁴S (4.25) M+2 ~4% per S
Cl ³⁵Cl (75.8), ³⁷Cl (24.2) M:M+2 = 3:1 per Cl
Br ⁷⁹Br (50.7), ⁸¹Br (49.3) M:M+2 = 1:1 per Br
I ¹²⁷I (100) none, but heavy mass

Patterns to recognize instantly:

Pattern Interpretation
M:M+2 = 3:1, ~equal one Cl
M:M+2 = 1:1, ~equal one Br
M:M+2:M+4 = 9:6:1 two Cl
M:M+2:M+4 = 1:2:1 two Br
M:M+2:M+4 = 3:4:1 one Cl + one Br
Strong M+1 (~1% per C) counts carbons (RDB calc)

Nitrogen rule

For neutral compounds with C, H, N, O, S, halogens — odd-mass M⁺• ⇒ odd number of N atoms (1, 3, 5...). Even-mass M⁺• ⇒ 0 or even N. Catches most assignment mistakes.

Degree of unsaturation (DBE)

DBE = (2C + 2 + N − H − X) / 2

DBE Common interpretation
0 fully saturated, acyclic
1 one ring OR one π bond
4 aromatic ring (3 π + 1 ring)
5 aromatic ring + C=O OR substituted phenyl
7 naphthalene

Important fragmentation rules

Rule Description
α-cleavage Break C-C next to heteroatom or carbonyl; charge stays on heteroatom-stabilized fragment
Loss of largest substituent At branched carbons, largest R leaves preferentially as radical
McLafferty Carbonyl with γ-H undergoes [1,5]-H shift through 6-membered TS, expelling alkene; charge on enol fragment (mass 58 for methyl ketone, 60 for acid, 74 for methyl ester etc.)
Retro-Diels-Alder Cyclohexenes expel a stable diene + dienophile (often after EI ionization)
Tropylium Benzyl cations rearrange to tropylium (C₇H₇⁺, m/z 91) — exceptionally stable
Acylium RC(=O)⁺ (m/z = R + 28); CH₃CO⁺ at 43, PhCO⁺ at 105

3. ¹H NMR

Cross-reference Ch 9 for theory.

Chemical shift table (δ, ppm — referenced to TMS = 0)

Alkyl region (0-3 ppm)

Proton environment δ (ppm) Notes
TMS reference 0.0 by definition
Cyclopropane CH 0.0-0.5 unusual upfield
-CH₃ (alkane) 0.8-1.0
-CH₂- (alkane) 1.2-1.5
-CH< (alkane) 1.4-1.8
-CH₂- (cyclohexane axial vs eq) 1.0-1.7 varies
-CH₃ on sp² C (allylic, vinyl methyl) 1.6-2.0
-CH₃ on sp C (propargyl-like) 1.7-2.0
-C≡C-H 2.0-3.0 sharp
-CH₂- α to C=O (ketone, aldehyde) 2.0-2.5
-CH₃ α to C=O 2.0-2.4 "methyl ketone" CH₃CO
-CH₂- α to COOR (ester) 2.0-2.4
-CH₂- α to COOH 2.0-2.5
-CH₂- α to C≡N (nitrile) 2.2-2.5
-CH₂- α to NO₂ 4.2-4.6 (way downfield)
-CH₂- α to Ar 2.3-2.8 benzylic
-CH₂- α to amine N (sp³) 2.2-2.9

Heteroatom-α region (3-5 ppm)

Proton environment δ (ppm)
-CH₃-O- (methyl ether) 3.2-3.4
-OCH₂- (any) 3.3-4.0
-CH-O- 3.5-4.5
-CH₂-Cl 3.4-3.8
-CH₂-Br 3.3-3.6
-CH₂-I 3.0-3.3
-CH₂-F 4.3-4.5
-CH-OH 3.4-4.0
-OCH₂-O- (acetal CH₂) 4.5-5.5
-O-CH(-)-O- (acetal CH) 5.0-5.8
-O-CHO (formate) 8.0-8.1

Alkene / aromatic region (4.5-9 ppm)

Proton environment δ (ppm)
Vinyl =CH₂ 4.6-5.0
Vinyl =CHR 5.0-5.5
Vinyl =CHR (conjugated) 5.5-6.5
Vinyl α to EWG 5.5-7.5
Aromatic Ar-H (benzene) 7.27
Aromatic Ar-H, EDG ring 6.5-7.2
Aromatic Ar-H, EWG ring 7.5-8.4
Heteroaromatic (pyridine 2,6-H) 8.5-8.7
Heteroaromatic (furan, thiophene) 6.0-7.5

Aldehyde, COOH, exchangeable region (9-15 ppm)

Proton environment δ (ppm) Notes
Aldehyde -CHO 9.5-10.0 sharp singlet often
Aryl aldehyde -CHO 9.7-10.5
Carboxylic acid -COOH 10.5-13 very broad
Phenol -OH 4-12 variable, broad
Alcohol -OH 0.5-5 variable, broad, exchangeable
Amine -NH 0.5-5 variable, exchangeable
Amide -NH 5-9 broad
Enol -OH (β-dicarbonyl) 15-17 very downfield, H-bonded

Coupling constants (J, Hz)

Coupling J (Hz) Notes
Vicinal sp³-sp³, free rotation 6-8 classic "n+1"
Vicinal sp³-sp³, fixed dihedral 60° (gauche) 2-4
Vicinal sp³-sp³, fixed dihedral 180° (anti) 8-13
Vicinal sp³-sp³, axial-axial (cyclohexane) 8-12
Vicinal sp³-sp³, ax-eq or eq-eq 2-4
Geminal sp³ (H-C-H) 10-18 (negative, but reported positive)
Geminal sp² (H₂C=) 0-3 small
Vicinal sp²-sp² cis (Z) 6-12
Vicinal sp²-sp² trans (E) 12-18
Vinyl cross-coupling (H-C=C-CH-) 4-10
Allylic (H-C-C=C-H, 4-bond) 0-3
Homoallylic (5-bond, through 2 sp²) 0-1 barely visible
Aromatic ortho (3-bond) 6-10
Aromatic meta (4-bond) 1-3
Aromatic para (5-bond) 0-1
α,β to carbonyl (enone Hα-Hβ) 10-17 E-enone trans
Heteroaromatic (pyridine 2-3) 4-6
H-F (vicinal) 5-30 very large, depends
H-P (P=O esters) 5-20

Splitting interpretation

Pattern Coupling partners Example
singlet (s) 0 neighbors -OCH₃, -CHO (sometimes), isolated -CH₂-
doublet (d) 1 neighbor -CH(-)-CH₃ if asymmetric
triplet (t) 2 equivalent neighbors -CH₂-CH₃ ethyl
quartet (q) 3 equivalent neighbors -CH₂-CH₃ for the CH₂
heptet 6 equivalent neighbors (CH₃)₂CH- isopropyl CH
doublet of doublets (dd) 2 non-equivalent neighbors typical for vinyl H in trisubstituted alkene
broad singlet (br s) exchangeable, or 14N-coupled -OH, -NH, -COOH

Integration

Integrals are ratios. Set the smallest integral to a small integer (often 1, 2, 3) and scale others. A 3-H peak at 2.1 ppm singlet ⇒ CH₃-CO- (methyl ketone). A 9-H singlet at 1.4 ppm ⇒ t-Bu.

Solvent residual peaks (¹H δ, ppm)

Solvent Residual ¹H Water peak
CDCl₃ 7.26 1.56
DMSO-d₆ 2.50 3.33
CD₃OD 3.31 4.87
D₂O (none) 4.79
Acetone-d₆ 2.05 2.84
Benzene-d₆ 7.16 0.40
CD₃CN 1.94 2.13
Pyridine-d₅ 8.74, 7.58, 7.22 4.97
Toluene-d₈ 7.09, 7.00, 6.98, 2.09 0.43
THF-d₈ 3.58, 1.72 2.46
DMF-d₇ 8.03, 2.92, 2.75 3.50

Pick deuterated solvent based on solubility of analyte and clarity in region of interest. CDCl₃ is the default; switch to DMSO-d₆ for OH/NH peaks (slow exchange) or polar substrates.


4. ¹³C NMR

Chemical shift table (δ, ppm)

Carbon environment δ (ppm)
TMS reference 0
-CH₃, -CH₂-, -CH-, -C- (alkane sp³) 5-50
-C(CH₃)₃ (quaternary sp³, t-Bu central C) 28-35
-CH₂-X (X = Cl, Br, I) 25-50
-CH₂-N (amine α-C) 30-55
-CH₂-O (alcohol, ether α-C) 50-90
-O-CH₃ (methoxy) 50-60
Acetal -O-C(-)-O- 90-110
-C≡C- (alkyne sp) 60-90
-C=C- (alkene sp²) 100-150
Aromatic C (ipso, ortho, meta, para) 110-170
C-O (aromatic, attached to OMe/OH) 145-165
-C≡N (nitrile C) 115-125
-C=N- (imine) 150-170
-COOR (ester C=O) 165-175
-COOH (acid C=O) 175-185
-CONR₂ (amide C=O) 165-180
-COCl (acid chloride C=O) 165-175
-CONHR (amide) 165-180
-CHO (aldehyde C=O) 190-205
-CO- (ketone C=O) 195-220
Cyclopentanone C=O 220
α,β-unsat ketone C=O (conjugation lowers) 195-205

DEPT interpretation

DEPT-135 phases CH and CH₃ up, CH₂ down, and quaternary C invisible. DEPT-90 shows only CH.

DEPT-135 phase CHₙ
Up CH, CH₃
Down CH₂
Absent C (quaternary), C=O carbon, ipso aromatic
DEPT-90 phase CHₙ
Up CH only
Absent CH₂, CH₃, C

Combine with ¹³C to assign every peak as 0, 1, 2, or 3 attached H's.

Solvent residual peaks (¹³C δ, ppm — septet for CDCl₃)

Solvent Peak (center)
CDCl₃ 77.16
DMSO-d₆ 39.52
CD₃OD 49.00
D₂O (none — reference externally)
Acetone-d₆ 29.84, 206.26
Benzene-d₆ 128.06
CD₃CN 1.32, 118.26
Pyridine-d₅ 150.35, 135.91, 123.87
THF-d₈ 67.21, 25.31

Other ¹³C techniques

Experiment Use
¹H-decoupled ¹³C Default — singlets only
Gated decoupling Quantitative ¹³C (preserves NOE)
Inverse-gated decoupling Quantitative ¹³C (suppresses NOE) — for integration
APT (Attached Proton Test) Like DEPT — CH/CH₃ vs CH₂/C

5. 2D NMR cheat sheet

Experiment Correlation What it shows When to use
¹H-¹H COSY through-bond (²J, ³J, ⁴J) ¹H neighbors via J-coupling mapping spin systems
TOCSY full spin system all coupled H's via mixing overlapping multiplets, sugars, peptides
HSQC ¹H-¹³C, 1-bond (¹J) which H is on which C assigning CHₙ
HMQC ¹H-¹³C, 1-bond (older, similar to HSQC) same as HSQC legacy use
HMBC ¹H-¹³C, 2-3 bond (²J, ³J) long-range H-C correlations finding quaternary C's, connectivity across heteroatoms
NOESY through-space (< ~5 Å) spatial proximity stereochemistry, conformation
ROESY through-space (small molecules) spatial proximity (for medium MW) when NOE is zero
INADEQUATE ¹³C-¹³C 1-bond direct C-C connectivity rare, requires concentration

Strategy — get HSQC first (assign CHₙ types); HMBC for piecing chains together across O/N; COSY for H-spin chains; NOESY for relative stereochem.


6. UV-Vis

Range — 200-800 nm. Beer's Law — A = ε c l, ε in M⁻¹cm⁻¹.

Common chromophores

Chromophore λmax (nm) ε (M⁻¹cm⁻¹) Transition
Isolated C=C ~170 10⁴ π→π* (below typical scan)
Isolated C=O ~280 10-30 n→π* (weak)
C=C conjugated to C=O (enone) 220, 320 10⁴, 30 π→π, n→π
Benzene 254 200 π→π* (B band)
Naphthalene 312 200
Anthracene 380 8000
Tetracene 480 "violet" — visible color start
-N=N- (azo) 350 10-50 n→π*
-NO₂ 270 10

Woodward-Fieser rules (dienes)

Base values (per parent chromophore):

Parent Base λ (nm)
Acyclic conjugated diene 217
Heteroannular diene 215
Homoannular diene 253

Add increments:

Substituent Δλ (nm)
Each additional conjugated C=C +30
Each alkyl group / ring residue +5
Each -OR +6
Each -SR +30
Each -NR₂ +60
Each Cl, Br +5
Each exocyclic C=C +5

Woodward-Fieser (enones)

Parent (α,β-unsat carbonyl) Base λ (nm)
Acyclic / 6-ring enone 215
5-ring enone 202
Acyclic α,β-unsat aldehyde 207
α,β-unsat acid/ester 195

Add:

Substituent Δλ (nm)
Each extra conjugated C=C +30
α-substituent (alkyl) +10
β-substituent (alkyl) +12
γ, δ, etc. (alkyl) +18
α-OH +35
β-OH +30
Each Cl on α +15
Solvent (EtOH ref); +H₂O −8; +MeOH

7. Combined structure determination workflow

When given a spectrum set for an unknown:

  1. Mass spec — molecular formula. - From M⁺• (or [M+H]⁺), find molecular weight. - Use HRMS exact mass and isotope pattern to nail down formula. Check N rule. - Calculate DBE = (2C + 2 + N − H − X)/2.
  2. DBE interpretation. - DBE = 0: saturated, acyclic. - DBE = 1: one ring or one C=C/C=O. - DBE ≥ 4: probably aromatic ring (4 DBE = benzene).
  3. IR — functional groups. - Look for C=O first (1650-1800) — very diagnostic. Position narrows it (acid chloride vs amide). - Then O-H, N-H (broad 3200-3500). - Then C≡C/C≡N (2100-2260). - Then aromatic markers (1450-1600, ~3000+, fingerprint sub. pattern).
  4. ¹H NMR — fragments and counts. - Note the integral ratios → relative H counts; scale to match molecular formula. - Identify each multiplet's chemical shift, integration, multiplicity, J-values. - Map shifts onto fragment guesses (e.g., 0.9 ppm 3H triplet ⇒ CH₃ end of an ethyl-or-longer chain; 3.7 ppm 3H singlet ⇒ -OCH₃ on ester or ether; 9.7 ppm 1H singlet ⇒ aldehyde -CHO). - Add up the H's accounted for; what's missing?
  5. ¹³C + DEPT — count distinct carbons by type. - Count peaks → distinct C environments. - Use DEPT to label CH₃, CH₂, CH, and quaternary. - Watch for symmetry: if formula says 8 C's but you see 4 peaks, the molecule has symmetry.
  6. Sketch fragments. Combine evidence into building blocks. Sum the formulas of the fragments; verify they add to the molecular formula (account for atoms used in linkages).
  7. Connect fragments. Use coupling (J-values) and 2D NMR (HSQC, HMBC, COSY) if needed.
  8. Stereochemistry. Use vicinal J-values (alkene cis/trans; cyclohexane ax/eq), then NOESY for proximity.
  9. Sanity check. Does the structure account for every signal and every atom? Does it match all the spectra and the DBE?

Worked-style heuristics:

  • Triplet 3H near 0.9 + quartet 2H near 2.4 + aromatic ring multiplet ⇒ propiophenone (Ph-CO-CH₂CH₃).
  • 9H singlet ~1.4 ⇒ t-Bu.
  • 2H singlet near 5.1 + 5H aromatic ⇒ -OCH₂Ph (benzyl ether).
  • 6H doublet ~1.2 + 1H septet ~4 ⇒ isopropyl on heteroatom.
  • 2H doublet ~7.5 + 2H doublet ~6.8 ⇒ para-disubstituted aromatic with EDG/EWG.

Combine the IR/MS/NMR/UV tables. The spectra are not mysteries — they are puzzles with all the rules in plain sight. Use Chs 6 and 9 for theory and worked examples. Bring this appendix to every problem set.